SIDEBAR
»
S
I
D
E
B
A
R
«
How the right kind of data visualization could lead to new research questions or insights.
Dec 30th, 2008 by analyticjournalism

Nathan, over at Flowingdata.com, posts this interesting data visualization from the Baylor College of Medicine. No, it probably doesn't give a science writer a story in itself, but the concept of taking a complex data set and illustrating that data with the right tool — in this case, Circos — good generate some interesting reporting vectors. For example, could Circos show us something about traffic patterns? Ambulance or fire department response times? We're not sure, but we hope someone could probe this a bit.

Researchers Map Chaos Inside Cancer Cell

Posted by Nathan / Dec 29, 2008 to Network Visualization / 2 comments

Researchers Map Chaos Inside Cancer Cell

The thing about cancer cells is that they suck. Their DNA is all screwy. They've got chunks of DNA ripped out and reinserted into different places, which is just plain bad news for the cells in our body that play nice. You know, kind of like life. Researchers at the Baylor College of Medicine in Houston have compared the DNA of a certain type of breast cancer cell to a normal cell and mapped the differences (and similarities) with the above visualization.

The graphic summarizes their results. Round the outer ring are shown the 23 chromosomes of the human genome. The lines in blue, in the third ring, show internal rearrangements, in which a stretch of DNA has been moved from one site to another within the same chromosome. The red lines, in the bull's eye, designate switches of DNA from one chromosome to another.

Some design would benefit the graphic so that your eyes don't bounce around when you look at the technicolor genome but it's interesting nevertheless.

Check out the Flare Visualization Toolkit or Circos if you're interested in implementing a similar visualization with the above network technique.



http://flowingdata.com/2008/12/29/researchers-map-chaos-inside-cancer-cell




 

Google's investment in mapping technologies
Dec 17th, 2008 by analyticjournalism

From O'Reilly's Radar:

GeoData Explorations: Google's Ever-Expanding Geo Investment

Posted: 16 Dec 2008 02:40 PM CST

Google has been investing lots of money in geodata acquisition. Some of the money is being spent externally: they've inked an exclusive satellite imagery deal with GeoEye (Radar post) and a data sharing deal Tele Atlas (Radar post). And some is being spent internally with Mapmaker, Street View and the web. Over the past week Google has been sharing visualizations of their internally gathered geodata. Here's a round-up of them.

google street view

The image above was released on December 9th. It shows how much of the US is available via Street View. According to the post Street View imagery increased 22 fold around the world in 2008.

google mapmaker viz

The dark image above was released on December 11th. It highlights the parts of the world that are being mapped on Google's Mapmaker by users (Radar post). Mapmaker is now live in 164 countries. According to the map it has gained the most traction in Africa and the Indian sub-continent. The Google Mapmaker team has released timelapse videos of Mapmaker building cities on the Mapmaker YouTube Channel. I've embedded one after the jump.

google georss kml

This final image shows all the points described by GeoRSS and KML all over the world. It was shown at Where 2.0 2007 by Michael Jones (video). Unsurprisingly, this image and the Mapmaker image show opposite data density concentrations.

In some more GeoData Explorations posts this week I will look at OSM vs Google and some surprising trends in KML.

This timelapse video of Da Lat, Vietnam being created is one of the most impressive. It shows a town and lake emerge from a blank slate.


 

GPS, mapping and Economic Development in your town
Dec 17th, 2008 by analyticjournalism

 Colleague Owen Densmore points us to this page with these comments:

This use of gps may play a role in understanding economic development in any city by watching the flows within the city:

http://digitalurban.blogspot.com/2008/12/gps-city-tracks-1-year-in-24-hours-via.html

This gets me to an aspect of ED I'm interested: MicroED.  It comes from the observation that all cities' ED is unique.  Think about every city you've lived in and you'll notice that each was unique.  For me, Rochester NY: Kodak/Xerox company towns; Silicon Valley: A network of startups and established companies with a highly mobile social/skill network.  Here in Santa Fe, we are similarly unique.

I think this is core: discover your unique environment and capitalize on improving it through managing it.  Data farming your city.  Graph its flows.

   — Owen

2008-12-17

GPS City Tracks: 1 Year in 24 Hours via Google Earth



GPS tracks can show the 'life' of a city, which parts of the city are working, areas that are no go zones and sections dedicated to shopping, work, entertainment etc. The possibilities for using GPS data to examine our cities 'health' are intriguing which turns us to the work by Fabian over at http://urbantick.blogspot.com/

The movie below illustrates Fabian's paths around the city of Plymouth over 365 days, compressed and visualised in Google Earth:




plymouth365_24H_duration from urbanTick on Vimeo.

Google Earth is an excellent tool for displaying GPS data, especially over time, we are just starting to look into other options, perhaps After Effects – any thoughts or ideas for visualising GPS tracks over time would be great…

See http://urbantick.blogspot.com/ for more movies and examples on visualising GPS tracks in the city.


 

Explore and Analyze Geographic Data with UUorld
Dec 8th, 2008 by analyticjournalism

Another good pointer from Nathan at Flowing Data:

Explore and Analyze Geographic Data with UUorld

Posted by Nathan / Dec 8, 2008 to Mapping / Add your comment

Explore and Analyze Geographic Data with UUorld

UUorld (pronounced “world”) is a 4-dimensional mapping tool that lets you explore geographic data – the fourth dimension being time. The interface will remind you a bit of Google Earth with the map, pan, zoom, etc, however, UUorld isn't trying to replace Google Earth. In fact, it'll probably be better if you use it with Google Earth. Think of it as another tool to add to your box of mapping toys.

UUorld's focus is on finding trends over space and time. Load your own data or import data from UUorld's data portal, and then play it out over time. Spatial boundaries undulate up and down as land masses look a bit like skyscrapers. Color and boundary lines are customizable. When you're satisfied with the results, record it as video or export as KML, and then import into Google Earth or whatever else you want.

How effective is this method of visualization though? There's the usual argument of area perception, but does color-coding and vertical dimension make up for that? Discuss amongst yourselves.

"International Survey of Journalism Educators in the Digital Age"
Dec 4th, 2008 by analyticjournalism

To see the relevant data of the “International Survey of Journalism Educators in the Digital Age,” click here.

»  Substance:WordPress   »  Style:Ahren Ahimsa